SporeWeb

Bacillus Subtilis

User subset of genes

t1 50  

 

add genes of interest (example: yybN,yxbD,spo0A,kinA,sigH )
use comma separated list for gene input

found 10 genes with 26 edges in search 'yybN,yxbD,spo0A,kinA,sigH'
User Subset


Visualisation by Cytoscape.js
Layout by Cola.js


 

Regulatory network interactions covering all stages


 

 

 

Sporulation cycle of Bacillus subtilis

All genes have been colour-coded according to their functional category. Important germination genes that are part of the minimal sporulation set as determined by Galperin and coworkers 182 are indicated by thick black rims.

 Class

    Antimicrobials
    Biofilm formation
    Cell division and DNA replication
    Cell wall degradation
    Cell wall metabolism
    Cell wall synthesis
    Competence
    DNA protection
    DNA repair
    Metabolism
    Mother cell lysis
    Mother cell metabolism
    Motility and chemotaxis
    Nucleotide biosynthesis
    Phosphorelay
    Resistance
    Respiration
    RNA chaperones
    Rnases
    Sortases
    Spore coat
    Spore coat assembly
    Spore coat maturation
    Spore cortex
    Spore germination
    Spore maturation
    Spore morphogenesis
    Sporulation protein
    Toxins and antitoxins
    Transcriptional regulation
    Translation
    Transport

 Usersubset legenda

blue edge = expression

red edge  = repression

Veg = Vegetative state

Sta = Starvation state

Ons = Onset state

Eng = Engulfment state

Com = Commitment state